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From Transit Unlimited

Bus systems

AC Transit	Bay side of the East Bay	Routes	Fares	Maps
County Connection	Central Contra Costa County	Routes	Fares	Maps
Benicia Breeze	Benicia	Routes	Fares
Dumbarton Express	Union City - Palo Alto	Routes	Fares
Emery Go-Round (free service)	Emeryville	Routes
Fairfield-Suisun Transit	Fairfield and Suisun	Routes	Fares	Maps
Golden Gate Transit	San Francisco and North Bay	Routes	Fares	Maps
Muni	San Francisco	Routes	Fares	Maps
Rio Vista Delta Breeze	Rio Vista	Routes	Fares
SamTrans	San Mateo County	Routes	Fares	Maps
Santa Cruz Metro	Santa Cruz County	Routes	Fares	Maps
Santa Rosa CityBus	Santa Rosa	Routes	Fares
Sonoma County Transit	Sonoma County	Routes	Fares	Maps
Tri Delta Transit	Northeastern Contra Costa County	Routes	Fares	Maps
Union City Transit	Union City	Routes	Fares	Maps
Vacaville City Coach	Vacaville	Routes	Fares
Vallejo Transit	Vallejo	Routes	Fares	Maps
VINE	Napa Valley	Routes	Fares	Maps
VTA	South Bay	Routes	Fares	Maps
WestCAT	Northwestern Contra Costa County	Routes	Fares	Maps
Wheels	Eastern Alameda County	Routes	Fares	Maps

Train systems

Altamont Commuter Express	Stockton - San Jose		Fares	Shuttles
BART	San Francisco Peninsula and East Bay	Stations	Fares	Shuttles
Caltrain	San Francisco - Gilroy	Stations	Fares	Shuttles
Capitol Corridor	Sacramento - San Jose		Fares
Muni Metro	San Francisco		Fares
Muni Historic Streetcar	San Francisco		Fares
Muni Cable cars	San Francisco		Fares
VTA Light Rail	South Bay	Stations	Fares

Ferry systems

Alcatraz Cruises	San Francisco - Alcatraz
Alameda/Oakland Ferry	Alameda/Oakland - San Francisco
Alameda Harbor Bay Ferry	Bay Farm Island - San Francisco
Angel Island - Tiburon Ferry	Angel Island - Tiburon
Blue and Gold Fleet	Sausalito/Tiburon - San Francisco
Golden Gate Ferry	Sausalito/Larkspur - San Francisco
Vallejo Baylink Ferry	Vallejo - San Francisco